Solanum lycopersicum v.2.3
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
The tomato (US: /təmeɪtoʊ/, UK: /təmɑːtoʊ/), Solanum lycopersicum, is a plant whose fruit is an edible berry that is eaten as a vegetable. The tomato is a member of the nightshade family that includes tobacco, potato, and chili peppers. It originated from and was domesticated in western South America. It was introduced to the Old World by the Spanish in the Columbian exchange in the 16th century.
Sequence Statistics
| No Sequences | 34727 |
|---|---|
| No Amino Acids | 11956401 |
| Min Seq. Length | 20 |
| Avg. Seq. Length | 344.297 |
| Max Seq. Length | 5104 |
| Seq. Length 1σ | 289.788 |
Disorder Prediction Statistics
| Predictor | % Genome Disordered | % Genome Disordered in SCOP Domains | Avg. % of Seq. Disordered | Avg. % of Disordered Regions in SCOP Domains | Avg. % of Seq. Disordered and in SCOP Domains |
|---|---|---|---|---|---|
| VLXT | 27.970 | 6.798 | 28.742 | 26.422 | 6.174 |
| VSL2b | 35.127 | 6.391 | 36.852 | 22.390 | 5.971 |
| PrDOS | 36.640 | 4.738 | 39.619 | 16.501 | 4.433 |
| PV2 | 39.646 | 7.385 | 43.550 | 21.878 | 6.949 |
| IUPred-S | 15.095 | 1.087 | 17.135 | 11.374 | 1.234 |
| IUPred-L | 15.795 | 1.258 | 21.239 | 18.195 | 1.699 |
| Espritz-N | 24.611 | 3.787 | 25.173 | 19.636 | 3.342 |
| Espritz-X | 14.807 | 0.864 | 17.970 | 8.800 | 1.103 |
| Espritz-D | 7.592 | 0.578 | 46.355 | 8.578 | 4.569 |
SUPERFAMILY Domains
| % Amino Acids with SCOP Assignment | % Sequences with SCOP Assignment | No of Domains | No of Superfamilies | No of Families | Avg. Family Size | Avg. Domain Length | Domain Pairs | Unique Domain Architectures |
|---|---|---|---|---|---|---|---|---|
| 43 | 54 | 25836 | 996 | 826 | 25.9 | 344 | 1010 | 3473 |