Solanum lycopersicum v.2.3
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
The tomato (/təmeɪtoʊ/ or /təmɑːtoʊ/) is the edible berry of the plant Solanum lycopersicum, commonly known as the tomato plant. The species originated in western South America, Mexico, and Central America. Its domestication and use as a cultivated food may have originated with the indigenous peoples of Mexico. The Aztecs used tomatoes in their cooking at the time of the Spanish conquest of the Aztec Empire, and after the Spanish encountered the tomato for the first time after their contact with the Aztecs, they brought the plant to Europe, in a widespread cultural interchange known as the Columbian exchange. From there, the tomato was introduced to other parts of the European-colonized world during the 16th century.
Sequence Statistics
No Sequences | 34727 |
---|---|
No Amino Acids | 11956401 |
Min Seq. Length | 20 |
Avg. Seq. Length | 344.297 |
Max Seq. Length | 5104 |
Seq. Length 1σ | 289.788 |
Disorder Prediction Statistics
Predictor | % Genome Disordered | % Genome Disordered in SCOP Domains | Avg. % of Seq. Disordered | Avg. % of Disordered Regions in SCOP Domains | Avg. % of Seq. Disordered and in SCOP Domains |
---|---|---|---|---|---|
VLXT | 27.970 | 6.798 | 28.742 | 26.422 | 6.174 |
VSL2b | 35.127 | 6.391 | 36.852 | 22.390 | 5.971 |
PrDOS | 36.640 | 4.738 | 39.619 | 16.501 | 4.433 |
PV2 | 39.646 | 7.385 | 43.550 | 21.878 | 6.949 |
IUPred-S | 15.095 | 1.087 | 17.135 | 11.374 | 1.234 |
IUPred-L | 15.795 | 1.258 | 21.239 | 18.195 | 1.699 |
Espritz-N | 24.611 | 3.787 | 25.173 | 19.636 | 3.342 |
Espritz-X | 14.807 | 0.864 | 17.970 | 8.800 | 1.103 |
Espritz-D | 7.592 | 0.578 | 46.355 | 8.578 | 4.569 |
SUPERFAMILY Domains
% Amino Acids with SCOP Assignment | % Sequences with SCOP Assignment | No of Domains | No of Superfamilies | No of Families | Avg. Family Size | Avg. Domain Length | Domain Pairs | Unique Domain Architectures |
---|---|---|---|---|---|---|---|---|
43 | 54 | 25836 | 996 | 826 | 25.9 | 344 | 1010 | 3473 |