Phytophthora capsici
Eukaryota; stramenopiles; Oomycetes; Peronosporales; Phytophthora
Phytophthora capsici is an oomycete plant pathogen that causes blight and fruit rot of peppers and other important commercial crops. It was first described by L. Leonian at the New Mexico State University Agricultural Experiment Station in Las Cruces in 1922 on a crop of chili peppers. In 1967, a study by M. M. Satour and E. E. Butler found 45 species of cultivated plants and weeds susceptible to P. capsici In Greek, Phytophthora capsici means "plant destroyer of capsicums". P. capsici has a wide range of hosts including members of the families Solanaceae and Cucurbitaceae as well as Fabaceae.
Sequence Statistics
No Sequences | 17414 |
---|---|
No Amino Acids | 6629787 |
Min Seq. Length | 49 |
Avg. Seq. Length | 380.716 |
Max Seq. Length | 7660 |
Seq. Length 1σ | 341.967 |
Disorder Prediction Statistics
Predictor | % Genome Disordered | % Genome Disordered in SCOP Domains | Avg. % of Seq. Disordered | Avg. % of Disordered Regions in SCOP Domains | Avg. % of Seq. Disordered and in SCOP Domains |
---|---|---|---|---|---|
VLXT | 32.791 | 7.471 | 33.726 | 26.155 | 7.016 |
VSL2b | 35.514 | 6.111 | 37.366 | 22.648 | 5.936 |
PrDOS | 34.636 | 4.475 | 37.125 | 17.849 | 4.372 |
PV2 | 35.351 | 7.007 | 45.062 | 24.274 | 7.987 |
IUPred-S | 16.414 | 1.395 | 18.067 | 13.128 | 1.490 |
IUPred-L | 18.205 | 1.743 | 21.918 | 19.763 | 1.949 |
Espritz-N | 25.481 | 4.128 | 25.775 | 20.741 | 3.661 |
Espritz-X | 16.132 | 0.993 | 18.529 | 10.351 | 1.203 |
Espritz-D | 7.205 | 0.442 | 34.002 | 7.029 | 3.621 |
SUPERFAMILY Domains
% Amino Acids with SCOP Assignment | % Sequences with SCOP Assignment | No of Domains | No of Superfamilies | No of Families | Avg. Family Size | Avg. Domain Length | Domain Pairs | Unique Domain Architectures |
---|---|---|---|---|---|---|---|---|
42 | 54 | 13746 | 967 | 761 | 14.2 | 381 | 1290 | 3049 |