Caenorhabditis brenneri
Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Caenorhabditis brenneri is a small nematode, closely related to the model organism Caenorhabditis elegans. Its genome is being sequenced by Washington University in St. Louis Genome Sequencing Center. This species has previously been referred to as C. sp 4 and Caenorhabditis sp. CB5161, but was recently formally described and given its scientific name. This name is in honor of Sydney Brenner, recognizing his pioneering role in starting active research in the field of C. elegans biology and development.
Sequence Statistics
| No Sequences | 30705 |
|---|---|
| No Amino Acids | 12161636 |
| Min Seq. Length | 4 |
| Avg. Seq. Length | 396.080 |
| Max Seq. Length | 22383 |
| Seq. Length 1σ | 392.107 |
Disorder Prediction Statistics
| Predictor | % Genome Disordered | % Genome Disordered in SCOP Domains | Avg. % of Seq. Disordered | Avg. % of Disordered Regions in SCOP Domains | Avg. % of Seq. Disordered and in SCOP Domains |
|---|---|---|---|---|---|
| VLXT | 30.935 | 5.059 | 30.171 | 20.038 | 4.661 |
| VSL2b | 38.538 | 5.190 | 38.169 | 17.880 | 4.807 |
| PrDOS | 37.714 | 4.097 | 38.664 | 14.262 | 3.782 |
| PV2 | 43.520 | 7.203 | 46.289 | 19.154 | 6.886 |
| IUPred-S | 18.951 | 1.061 | 19.193 | 8.796 | 1.083 |
| IUPred-L | 21.285 | 1.370 | 24.840 | 14.252 | 1.615 |
| Espritz-N | 27.272 | 2.996 | 26.172 | 15.366 | 2.607 |
| Espritz-X | 17.620 | 0.738 | 19.203 | 7.036 | 0.926 |
| Espritz-D | 8.956 | 0.438 | 37.686 | 5.910 | 3.110 |
SUPERFAMILY Domains
| % Amino Acids with SCOP Assignment | % Sequences with SCOP Assignment | No of Domains | No of Superfamilies | No of Families | Avg. Family Size | Avg. Domain Length | Domain Pairs | Unique Domain Architectures |
|---|---|---|---|---|---|---|---|---|
| 34 | 45 | 21945 | 931 | 757 | 23.6 | 396 | 1027 | 3355 |