Takifugu rubripes, commonly known as the Japanese puffer, Japanese pufferfish, Tiger puffer, or torafugu (Japanese: 虎河豚), is a pufferfish in the genus Takifugu. It is distinguished by a very small genome that has been fully sequenced because of its use as a model species and is in widespread use as a reference in genomics.
Sequence Statistics
| No Sequences | 47841 |
|---|---|
| No Amino Acids | 30262810 |
| Min Seq. Length | 20 |
| Avg. Seq. Length | 632.571 |
| Max Seq. Length | 21853 |
| Seq. Length 1σ | 535.703 |
Disorder Prediction Statistics
| Predictor | % Genome Disordered | % Genome Disordered in SCOP Domains | Avg. % of Seq. Disordered | Avg. % of Disordered Regions in SCOP Domains | Avg. % of Seq. Disordered and in SCOP Domains |
|---|---|---|---|---|---|
| VLXT | 33.182 | 8.655 | 31.622 | 35.965 | 9.032 |
| VSL2b | 40.781 | 9.551 | 38.989 | 32.978 | 10.024 |
| PrDOS | 39.587 | 6.950 | 38.230 | 25.703 | 7.390 |
| PV2 | 45.764 | 12.203 | 46.605 | 34.823 | 13.680 |
| IUPred-S | 19.527 | 2.000 | 18.465 | 18.985 | 2.246 |
| IUPred-L | 22.596 | 2.671 | 22.661 | 25.001 | 3.064 |
| Espritz-N | 30.655 | 5.771 | 28.400 | 29.484 | 5.801 |
| Espritz-X | 18.426 | 1.380 | 18.105 | 14.728 | 1.793 |
| Espritz-D | 5.007 | 0.317 | 18.392 | 7.979 | 3.115 |
SUPERFAMILY Domains
| % Amino Acids with SCOP Assignment | % Sequences with SCOP Assignment | No of Domains | No of Superfamilies | No of Families | Avg. Family Size | Avg. Domain Length | Domain Pairs | Unique Domain Architectures |
|---|---|---|---|---|---|---|---|---|
| 49 | 82 | 93451 | 1084 | 1212 | 86.2 | 633 | 1563 | 6473 |