Phytophthora sojae 1.1
Eukaryota; stramenopiles; Oomycetes; Pythiales; Pythiaceae; Phytophthora
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Phytophthora sojae is an oomycete and a soil-borne plant pathogen that causes stem and root rot of soybean. This is a prevalent disease in most soybean growing regions, and a major cause of crop loss. In wet conditions the pathogen produces zoospores that move in water and are attracted to soybean roots. Zoospores can attach to roots, germinate, and infect the plant tissues. Diseased roots develop lesions that may spread up the stem and eventually kill the entire plant. Phytophthora sojae also produces oospores that can remain dormant in the soil over the winter, or longer, and germinate when conditions are favourable. Oospores may also be spread by animals or machinery.
Sequence Statistics
No Sequences | 19027 |
---|---|
No Amino Acids | 9485042 |
Min Seq. Length | 10 |
Avg. Seq. Length | 498.504 |
Max Seq. Length | 10590 |
Seq. Length 1σ | 445.550 |
Disorder Prediction Statistics
Predictor | % Genome Disordered | % Genome Disordered in SCOP Domains | Avg. % of Seq. Disordered | Avg. % of Disordered Regions in SCOP Domains | Avg. % of Seq. Disordered and in SCOP Domains |
---|---|---|---|---|---|
VLXT | 37.420 | 6.107 | 37.414 | 21.958 | 6.117 |
VSL2b | 40.818 | 5.109 | 41.654 | 19.048 | 5.258 |
PrDOS | 39.020 | 3.542 | 40.209 | 14.224 | 3.620 |
PV2 | 46.460 | 6.877 | 47.861 | 20.234 | 6.905 |
IUPred-S | 20.332 | 1.141 | 21.261 | 10.884 | 1.300 |
IUPred-L | 23.879 | 1.515 | 26.026 | 15.760 | 1.677 |
Espritz-N | 32.045 | 3.815 | 31.336 | 17.944 | 3.577 |
Espritz-X | 20.675 | 0.843 | 22.534 | 8.278 | 1.071 |
Espritz-D | 8.161 | 0.256 | 28.971 | 4.790 | 2.225 |
SUPERFAMILY Domains
% Amino Acids with SCOP Assignment | % Sequences with SCOP Assignment | No of Domains | No of Superfamilies | No of Families | Avg. Family Size | Avg. Domain Length | Domain Pairs | Unique Domain Architectures |
---|---|---|---|---|---|---|---|---|
38 | 54 | 16145 | 879 | 652 | 18.4 | 499 | 1066 | 3149 |