Phytophthora ramorum 1.1
Eukaryota; stramenopiles; Oomycetes; Pythiales; Pythiaceae; Phytophthora
Phytophthora ramorum is the oomycete known to cause the disease sudden oak death (SOD). The disease kills oak and other species of trees and has had devastating effects on the oak populations in California and Oregon, as well as being present in Europe. Symptoms include bleeding cankers on the tree's trunk and dieback of the foliage, in many cases leading to the death of the tree.
Sequence Statistics
| No Sequences | 15743 |
|---|---|
| No Amino Acids | 7482910 |
| Min Seq. Length | 35 |
| Avg. Seq. Length | 475.317 |
| Max Seq. Length | 10810 |
| Seq. Length 1σ | 405.067 |
Disorder Prediction Statistics
| Predictor | % Genome Disordered | % Genome Disordered in SCOP Domains | Avg. % of Seq. Disordered | Avg. % of Disordered Regions in SCOP Domains | Avg. % of Seq. Disordered and in SCOP Domains |
|---|---|---|---|---|---|
| VLXT | 35.284 | 6.645 | 35.052 | 25.997 | 6.874 |
| VSL2b | 38.598 | 5.578 | 38.806 | 22.877 | 5.980 |
| PrDOS | 37.480 | 4.100 | 37.818 | 17.774 | 4.269 |
| PV2 | 44.333 | 7.372 | 45.464 | 23.830 | 7.780 |
| IUPred-S | 18.364 | 1.244 | 18.898 | 13.556 | 1.544 |
| IUPred-L | 21.334 | 1.597 | 23.111 | 19.241 | 1.905 |
| Espritz-N | 29.401 | 4.002 | 28.523 | 21.120 | 3.909 |
| Espritz-X | 18.842 | 0.947 | 20.058 | 10.686 | 1.238 |
| Espritz-D | 7.005 | 0.354 | 26.485 | 6.840 | 3.452 |
SUPERFAMILY Domains
| % Amino Acids with SCOP Assignment | % Sequences with SCOP Assignment | No of Domains | No of Superfamilies | No of Families | Avg. Family Size | Avg. Domain Length | Domain Pairs | Unique Domain Architectures |
|---|---|---|---|---|---|---|---|---|
| 40 | 59 | 13977 | 882 | 664 | 15.8 | 475 | 1054 | 3010 |