Populus trichocarpa 6.0
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Malpighiales; Salicaceae; Saliceae; Populus
Populus trichocarpa, the black cottonwood, western balsam-poplar or California poplar, is a deciduous broadleaf tree species native to western North America. It is used for timber, and is notable as a model organism in plant biology.
Sequence Statistics
| No Sequences | 45033 |
|---|---|
| No Amino Acids | 17235199 |
| Min Seq. Length | 21 |
| Avg. Seq. Length | 382.724 |
| Max Seq. Length | 5317 |
| Seq. Length 1σ | 297.897 |
Disorder Prediction Statistics
| Predictor | % Genome Disordered | % Genome Disordered in SCOP Domains | Avg. % of Seq. Disordered | Avg. % of Disordered Regions in SCOP Domains | Avg. % of Seq. Disordered and in SCOP Domains |
|---|---|---|---|---|---|
| VLXT | 29.078 | 7.409 | 29.528 | 28.458 | 6.995 |
| VSL2b | 35.986 | 6.917 | 37.074 | 24.264 | 6.678 |
| PrDOS | 37.038 | 4.864 | 38.630 | 17.619 | 4.660 |
| PV2 | 40.503 | 7.857 | 43.105 | 23.802 | 7.672 |
| IUPred-S | 15.321 | 1.167 | 16.529 | 12.273 | 1.352 |
| IUPred-L | 16.214 | 1.378 | 19.778 | 19.104 | 1.847 |
| Espritz-N | 25.672 | 4.104 | 25.618 | 21.236 | 3.801 |
| Espritz-X | 15.072 | 0.936 | 17.232 | 9.480 | 1.201 |
| Espritz-D | 6.619 | 0.531 | 35.977 | 8.686 | 4.442 |
SUPERFAMILY Domains
| % Amino Acids with SCOP Assignment | % Sequences with SCOP Assignment | No of Domains | No of Superfamilies | No of Families | Avg. Family Size | Avg. Domain Length | Domain Pairs | Unique Domain Architectures |
|---|---|---|---|---|---|---|---|---|
| 44 | 59 | 37760 | 974 | 814 | 38.8 | 383 | 994 | 3703 |