Oryza glaberrima, commonly known as African rice, is one of the two domesticated rice species. It was first domesticated and grown in West Africa around 3,000 years ago. In agriculture, it has largely been replaced by higher-yielding Asian rice (O. sativa), and the number of varieties grown is declining. It still persists, making up an estimated 20% of rice grown in West Africa. It is now rarely sold in West African markets, having been replaced by Asian strains.
Sequence Statistics
| No Sequences | 31044 |
|---|---|
| No Amino Acids | 11247789 |
| Min Seq. Length | 23 |
| Avg. Seq. Length | 362.318 |
| Max Seq. Length | 4738 |
| Seq. Length 1σ | 284.571 |
Disorder Prediction Statistics
| Predictor | % Genome Disordered | % Genome Disordered in SCOP Domains | Avg. % of Seq. Disordered | Avg. % of Disordered Regions in SCOP Domains | Avg. % of Seq. Disordered and in SCOP Domains |
|---|---|---|---|---|---|
| VLXT | 34.137 | 7.580 | 37.402 | 23.282 | 6.736 |
| VSL2b | 39.215 | 6.678 | 43.721 | 20.236 | 6.099 |
| PrDOS | 38.010 | 4.731 | 42.483 | 15.387 | 4.236 |
| PV2 | 41.299 | 7.821 | 51.343 | 21.363 | 7.954 |
| IUPred-S | 17.888 | 1.217 | 21.350 | 10.632 | 1.285 |
| IUPred-L | 20.085 | 1.582 | 26.133 | 15.659 | 1.809 |
| Espritz-N | 29.474 | 4.438 | 31.956 | 18.377 | 3.843 |
| Espritz-X | 19.223 | 1.073 | 23.862 | 8.158 | 1.226 |
| Espritz-D | 9.495 | 0.490 | 42.545 | 6.026 | 3.021 |
SUPERFAMILY Domains
| % Amino Acids with SCOP Assignment | % Sequences with SCOP Assignment | No of Domains | No of Superfamilies | No of Families | Avg. Family Size | Avg. Domain Length | Domain Pairs | Unique Domain Architectures |
|---|---|---|---|---|---|---|---|---|
| 41 | 52 | 22409 | 941 | 760 | 23.8 | 362 | 918 | 3111 |