Citrus sinensis 6.0
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; malvids; Sapindales; Rutaceae; Citrus
The orange, also called sweet orange to distinguish it from the bitter orange (Citrus × aurantium), is the fruit of a tree in the family Rutaceae. Botanically, this is the hybrid Citrus × sinensis, between the pomelo (Citrus maxima) and the mandarin orange (Citrus reticulata). The chloroplast genome, and therefore the maternal line, is that of pomelo. There are many related hybrids including of mandarins and sweet orange. The sweet orange has had its full genome sequenced.
Sequence Statistics
| No Sequences | 46147 |
|---|---|
| No Amino Acids | 19104743 |
| Min Seq. Length | 31 |
| Avg. Seq. Length | 413.998 |
| Max Seq. Length | 5400 |
| Seq. Length 1σ | 311.239 |
Disorder Prediction Statistics
| Predictor | % Genome Disordered | % Genome Disordered in SCOP Domains | Avg. % of Seq. Disordered | Avg. % of Disordered Regions in SCOP Domains | Avg. % of Seq. Disordered and in SCOP Domains |
|---|---|---|---|---|---|
| VLXT | 29.137 | 7.577 | 28.798 | 32.112 | 7.750 |
| VSL2b | 35.557 | 6.863 | 35.535 | 27.123 | 7.180 |
| PrDOS | 36.734 | 5.007 | 36.877 | 19.881 | 5.141 |
| PV2 | 40.013 | 7.958 | 41.276 | 26.899 | 8.415 |
| IUPred-S | 15.203 | 1.187 | 15.481 | 14.057 | 1.470 |
| IUPred-L | 16.357 | 1.364 | 18.954 | 20.784 | 1.943 |
| Espritz-N | 25.583 | 4.103 | 24.746 | 23.916 | 4.152 |
| Espritz-X | 15.075 | 0.977 | 16.312 | 11.148 | 1.328 |
| Espritz-D | 5.783 | 0.466 | 30.692 | 9.611 | 4.519 |
SUPERFAMILY Domains
| % Amino Acids with SCOP Assignment | % Sequences with SCOP Assignment | No of Domains | No of Superfamilies | No of Families | Avg. Family Size | Avg. Domain Length | Domain Pairs | Unique Domain Architectures |
|---|---|---|---|---|---|---|---|---|
| 46 | 67 | 44221 | 951 | 789 | 46.5 | 414 | 943 | 3848 |