Phytophthora ramorum is the oomycete plant pathogen known to cause the disease sudden oak death (SOD). The disease kills oak and other species of trees and has had devastating effects on the oak populations in California and Oregon, as well as being present in Europe. Symptoms include bleeding cankers on the tree's trunk and dieback of the foliage, in many cases eventually leading to the death of the tree.

Sequence Statistics

No Sequences15743
No Amino Acids7482910
Min Seq. Length35
Avg. Seq. Length475.317
Max Seq. Length10810
Seq. Length 1σ405.067

Disorder Prediction Statistics

Predictor % Genome Disordered % Genome Disordered in SCOP Domains Avg. % of Seq. Disordered Avg. % of Disordered Regions in SCOP Domains Avg. % of Seq. Disordered and in SCOP Domains
VLXT 35.284 6.645 35.052 25.997 6.874
VSL2b 38.598 5.578 38.806 22.877 5.980
PrDOS 37.480 4.100 37.818 17.774 4.269
PV2 44.333 7.372 45.464 23.830 7.780
IUPred-S 18.364 1.244 18.898 13.556 1.544
IUPred-L 21.334 1.597 23.111 19.241 1.905
Espritz-N 29.401 4.002 28.523 21.120 3.909
Espritz-X 18.842 0.947 20.058 10.686 1.238
Espritz-D 7.005 0.354 26.485 6.840 3.452

SUPERFAMILY Domains

% Amino Acids with SCOP Assignment % Sequences with SCOP Assignment No of Domains No of Superfamilies No of Families Avg. Family Size Avg. Domain Length Domain Pairs Unique Domain Architectures
40 59 13977 882 664 15.8 475 1054 3010

Discussion about Phytophthora ramorum 1.1


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