Populus trichocarpa, the black cottonwood, western balsam-poplar or California poplar, is a deciduous broadleaf tree species native to western North America. It is used for timber, and is notable as a model organism in plant biology. Its full genome sequence was published in 2006. It is the first tree species to be sequenced.

Sequence Statistics

No Sequences45033
No Amino Acids17235199
Min Seq. Length21
Avg. Seq. Length382.724
Max Seq. Length5317
Seq. Length 1σ297.897

Disorder Prediction Statistics

Predictor % Genome Disordered % Genome Disordered in SCOP Domains Avg. % of Seq. Disordered Avg. % of Disordered Regions in SCOP Domains Avg. % of Seq. Disordered and in SCOP Domains
VLXT 29.078 7.409 29.528 28.458 6.995
VSL2b 35.986 6.917 37.074 24.264 6.678
PrDOS 37.038 4.864 38.630 17.619 4.660
PV2 40.503 7.857 43.105 23.802 7.672
IUPred-S 15.321 1.167 16.529 12.273 1.352
IUPred-L 16.214 1.378 19.778 19.104 1.847
Espritz-N 25.672 4.104 25.618 21.236 3.801
Espritz-X 15.072 0.936 17.232 9.480 1.201
Espritz-D 6.619 0.531 35.977 8.686 4.442

SUPERFAMILY Domains

% Amino Acids with SCOP Assignment % Sequences with SCOP Assignment No of Domains No of Superfamilies No of Families Avg. Family Size Avg. Domain Length Domain Pairs Unique Domain Architectures
44 59 37760 974 814 38.8 383 994 3703

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